PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10002972m
Common NameCICLE_v10002972mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 91aa    MW: 10182.6 Da    PI: 8.7101
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10002972mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.58.7e-122890169
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHH CS
               B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFv 69
                     f+k +++s+v +  +l lp++f++++  +k + ++++lede+gr++e  +i  kk+    l++GW+ F+
  Ciclev10002972m 28 FIKSMVRSHVYSCFWLGLPNQFCKQNL-PK-TVTEMVLEDENGREFEAVYIGPKKG----LSGGWRAFA 90
                     89*********************9994.33.3459***************655555....9******96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-111990IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-132290IPR015300DNA-binding pseudobarrel domain
CDDcd100171.30E-162690No hitNo description
PROSITE profilePS508639.0932890IPR003340B3 DNA binding domain
PfamPF023624.4E-102890IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MASYEERARA LKSAEQLQSS LQSGYPSFIK SMVRSHVYSC FWLGLPNQFC KQNLPKTVTE  60
MVLEDENGRE FEAVYIGPKK GLSGGWRAFA *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015384133.17e-63PREDICTED: putative B3 domain-containing protein At5g58280
SwissprotQ5KQI47e-38Y5814_ORYSJ; B3 domain-containing protein Os05g0481400
TrEMBLA0A067EVH81e-61A0A067EVH8_CITSI; Uncharacterized protein (Fragment)
TrEMBLV4SWW11e-62V4SWW1_9R
STRINGVIT_06s0004g08270.t011e-43(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM161411214
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.12e-32B3 family protein